PROFIL PRACOWNIKA: Sebastian Sakowski

Assistant Professor at the Faculty of Mathematics and Computer Science of the University of Lodz and Leader of the Mathematical Modelling and Computational Methods Team at the Centre for Data Analysis, Modelling, and Computational Sciences of the University of Lodz. He obtained a Ph.D. degree in computer science from the Institute of Computer Science of the Silesian University of Technology. He conducts scientific research and lectures in the field of computer science, as well as data analysis. Co-author of publications on theoretical and applied computer science. His work has been published in international journals, including in Applied Sciences, Theoretical Computer Science, Fundamenta Informaticae. Member of the Polish Bioinformatics Society.

Publikacje:

1. H.C. Kiang, K. Bartoszek, S. Sakowski, S.M. Iacus, M. Vespe: Summarizing Global SARS-CoV-2 Geographical Spread by Phylogenetic Multitype Branching Models. Lecture Notes in Computer Science, Springer, Cham, vol 13483, 170–184, 2022. DOI: 10.1007/978-3-031-20837-9_14
2. S. Sakowski, J. Waldmajer, I. Majsterek, T. Popławski: DNA Computing: Concepts for Medical Applications. Applied Sciences, 2022, 12, 6928. DOI: 10.3390/app12146928 (IF: 2.838 )
3. D. Tahir, I. Kaj, K. Bartoszek, M. Majchrzak, P. Parniewski, S. Sakowski: Using multitype branching models to analyze bacterial pathogenicity. Mathematica Applicanda, 48 (1), 59-86, 2020. DOI: 10.14708/ma.v48i1.6465
4. J. Waldmajer, Z. Bonikowski, S. Sakowski: Theory of tailor automata. Theoretical Computer Science, 785, 60-82, 2019. DOI: 10.1016/j.tcs.2019.02.002 (IF: 0.772)
5. J. Waldmajer, S. Sakowski: A solution to the problem of the maximal number of symbols for biomolecular computer. Informatica, 43, 485–494, 2019. DOI: 10.31449/inf.v43i4.2725
6. K. Bartoszek, M. Majchrzak, S. Sakowski, A. B. Kubiak-Szeligowska, I. Kaj, P. Parniewski: Predicting pathogenicity behavior in Escherichia coli population through a state dependent model and TRS profiling. PLoS computational biology , 14(1), 2018, e1005931. DOI: 10.1371/journal.pcbi.1005931 (IF: 3.955)
7. S. Sakowski, T. Krasiński, J. Sarnik, J. Blasiak, J. Waldmajer, T. Poplawski: A detailed experimental study of a DNA computer with two endonucleases. Zeitschrift für Naturforschung C, 72(7-8), 303-313, 2017. DOI: 10.1515/znc-2016-0137 (IF: 0.835).
8. S. Sakowski, T. Krasiński, J. Waldmajer, J. Sarnik, J. Blasiak, T. Poplawski: Biomolecular computers with multiple restriction enzymes. Genetics and Molecular Biology, 40(4), 860-870, 2017. DOI: 10.1590/1678-4685-gmb-2016-0132(IF: 1.341)
9. T. Krasiński, S. Sakowski, J. Waldmajer, T. Popławski: Arithmetical analysis of biomolecular finite automaton. Fundamenta Informaticae, 128(4), 463-474, 2013. DOI: 10.3233/FI-2013-953(IF: 0.687)
10. T. Krasiński, S. Sakowski, T. Popławski: Towards an autonomous multistate biomolecular devices built on DNA. Nature and Biologically Inspired Computing, IEEE, 23-28, 2014. DOI: 10.1109/NaBIC.2014.6921899
11. J. Błasiak, T. Krasiński, Ł. Rogowski, S. Sakowski, T. Popławski: Wnioskowanie logiczne przy użyciu DNA. Postępy Biologii Komórki, 40(4), 645-658, 2013. (IF: 0.203)
12. T. Krasiński, S. Sakowski, T. Popławski: Autonomous push-down automaton built on DNA. Informatica, 36(3), 263-276, 2012.
13. J. Błasiak, T. Krasiński, T. Popławski, S. Sakowski: DNA Computing. Postępy Biochemii, 57(1), 13-23, 2011.
14. T. Krasiński, S. Sakowski: Extended Shapiro Finite State Automaton. Foundations of Computing and Decision Science, 33(3), 241-255, 2008.
15. T. Krasiński, S. Sakowski: A review of models and practical implementations of DNA computation. Studia Informatica, 29(4A), 5-31, 2008.
16. T. Krasiński, S. Sakowski: A theoretical model of the Shapiro finite state automaton built on DNA. Theoretical and Applied Informatics, 18 (3), 161-174, 2006.

Komunikaty na konferencjach międzynarodowych:

1. J. Waldmajer, Z. Bonikowski, S. Sakowski: Conditions for the existence of a non-trivial tailor automaton. The Third International Conference On the Trail of Women in Mathematics - Contemporary Women in Mathematics. Gdańsk, 15–17 September 2022.
2. K. Bartoszek, H. Kiang, S. Sakowski, S. Iacus, M. Vespe: SARS–CoV–2 geographical spread through multitype branching models. 17th edition of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2021.
3. S. Sakowski, T. Krasiński, J. Sarnik, J. Blasiak, J. Waldmajer, T. Poplawski: Autonomous biomolecular automata with multiple restriction enzymes. The 22nd International Conference on DNA Computing and Molecular Programming, DNA 22, Munich, Germany, Date: September 4-8, 2016.
4. T. Krasiński, S. Sakowski, T. Popławski: Towards an autonomous multistate biomolecular devices built on DNA. The Sixth World Congress on Nature and Biologically Inspired Computing, NaBIC, IEEE, Porto, Portugal, Date: July 30-01 August, 2014.

Komunikaty na konferencjach krajowych:

1. S. Sakowski, J. Waldmajer, I. Majsterek, T. Popławski: Biochips based on biomolecular computers.The XXVII National Conference Applications of Mathematics in Biology and Medicine. Wisła, September 06–10, 2022.
2. J. Waldmajer, S. Sakowski: A solution to the problem of the maximal number of symbols for biomolecular computer. The XXV National Conference Applications of Mathematics in Biology and Medicine. Jadwisin, September 16–20, 2019.
3. J. Waldmajer, Z. Bonikowski, S. Sakowski: Theory of tailor automata. The XXIV National Conference on Applications of Mathematics in Biology and Medicine. Zakopane-Kościelisko, Poland, September 3–7, 2018.
4. K. Bartoszek, M. Majchrzak, S. Sakowski, A. B. Kubiak-Szeligowska, I. Kaj, P. Parniewski: Predicting pathogenicity behavior in Escherichia coli population through a state dependent model and TRS profiling. The XXIV National Conference on Applications of Mathematics in Biology and Medicine. Zakopane-Kościelisko, Poland, September 3–7, 2018.
5. S. Sakowski, T. Krasinski, J. Sarnik, J. Błasiak, J. Waldmajer, T. Popławski: A detailed study of a DNA computer with multiple endonucleases. The XXIII National Conference Applications of Mathematics in Biology and Medicine, Jugowice, Poland, September 11–15, 2017.
6. T. Krasiński, S. Sakowski, J. Sarnik, J. Waldmajer, J. Blasiak, T. Popławski: More powerful biomolecular computer with many restriction enzymes. The XXI National Conference Applications of Mathematics in Biology and Medicine, Regietów, Poland, September 22–26, 2015.
7. J. Sarnik, S. Sakowski, J.Błasiak, T. Krasiński, T. Popławski: Construction of biomolecular computer with DNA and restrictions enzymes. Congress of the Polish Biochemistry, Cell Biology, Biophysics and Bioinformatics, Warszawa, 101, September 9-12, 2014.
8. J. Błasiak, T. Krasiński, T. Rogowski, S. Sakowski, T. Popławski: Logical inference based on DNA. The XX National Conference Applications of Mathematics in Biology and Medicine, Łochów, Poland, September 23–27, 2014.
9. T. Krasiński, S. Sakowski, J. Waldmajer, T. Popławski: Arithmetical analysis of biomolecular finite automaton.The XIX National Conference Applications of Mathematics in Biology and Medicine, Jastrzębia Góra, Poland, September 16–20, 2013.
10. T. Krasinsk, S. Sakowski, T. Popławski: Autonomous push-down automaton built on DNA. The XVIII National Conference Applications of Mathematics in Biology and Medicine, Krynica Morska, Poland, September 23–27, 2012.